Table 1 Summary of node types in Biomine
Node type | Source databases | Count | Mean degree |
|---|---|---|---|
Article | PubMed | 533,000 | 3.9 |
Protein | UniProt, STRING | 275,000 | 29.6 |
Gene | Entrez Gene | 193,000 | 18.6 |
Homology group | Entrez HomoloGene | 25,000 | 3.2 |
Biological process | GO | 20,000 | 32.5 |
Gene variant | OMIM | 19,000 | 1.4 |
Gene location (Locus) | Entrez Gene, OMIM | 12,000 | 18.7 |
Protein family | InterPro | 12,000 | 69.6 |
Molecular function | GO | 10,000 | 49.1 |
Drug | KEGG | 8,800 | 0.7 |
Protein feature | InterPro | 8,000 | 69.6 |
Phenotype | OMIM | 6,500 | 17.0 |
Enzyme | KEGG | 5,100 | 10.2 |
Cellular component | GO | 2,900 | 122.2 |
Pathway | KEGG, UniProt | 1,800 | 37.1 |
Tissue | UniProt | 1,300 | 189.1 |
| Â | Â | total 1,133,000 | 14.8 |