Domains represented by UAG members and Chair* | |
---|---|
Model Organism Databases | dictyBase, MGI, TAIR, Gramene, Wormbase |
Protein Sequence Databases | UniProtKB |
Protein-Protein Interaction Databases | BioGrid, MINT |
Ontologies | Gene Ontology, Protein Ontology, Plant Ontology, Microbial Phenotype Ontology |
Pharmaceutical Companies | Dupont, Merck KGaA, Pfizer |
Examples of text mining needs among UAG members | |
â–¡ gene normalization â–¡ mapping to ontologies (e.g., GO, PO, PRO) either for annotation or semantic integration â–¡ entity normalization and relevance scoring to help automate relationship extraction and data integration of text mined facts with external and internal sources | Identification of articles: â–¡ related to a specific topic (PPI, biomarkers) â–¡ reporting experimental information for gene/proteins in a given organism â–¡ with experimental characterization of gene/protein with associated reporting of organism and gene normalization when available â–¡ new articles not yet in the database |