Skip to main content

Table 5 Number and percentage of significant overlap genes with SAM

From: Finding consistent disease subnetworks across microarray datasets

  

SNet

SAM

SAM

Leukaemia

Num Genes

Genes overlap

δ =84

91.30%

1305

49.96%

84

22.62%

ALL subtype

Num Genes

Genes overlap

δ =75

93.01%

464

81.25%

75

49.33%

DMD

Num Genes

Genes overlap

δ =45

69.23%

126

76.98%

45

42.22%

Lung

Num Genes

Genes overlap

δ =65

51.18%

966

65.61

65

24.62%

  1. Table showing the number and percentage of significant overlapping genes. γ refers to the number of genes compared against and is the number of unique genes within all the significant subnetworks of the disease datasets. The gene overlap refers to the percentage gene overlap between the two datasets of a disease for SNet (column 3) and SAM (column 4: for genes at P leq 0.05; and column 5: for top γ significant genes).