Table 1 Network data sets
From: Resolving the structure of interactomes with hierarchical agglomerative clustering
Name | V | E |
| Kind | Organism | Source |
|---|---|---|---|---|---|---|
Arabidopsis | 777 | 1,831 | 4.71 | Physical | A. Thaliana | BioGRID1 |
Celegans | 1,089 | 2,842 | 5.22 | Physical | C. elegans | BioGRID1 |
Drosophila | 4,692 | 19,876 | 8.47 | Physical | D. melanogaster | BioGRID1 |
Human | 6,094 | 26,112 | 8.57 | Physical | H. sapiens | BioGRID1 |
Yeast-PPI | 5,105 | 50,542 | 19.80 | Physical | S. cerevisiae | BioGRID1 |
Yeast-GEN | 4,763 | 85,855 | 36.05 | Genetic | S. cerevisiae | BioGRID1,2 |
SGA | 4,398 | 108,369 | 49.38 | Genetic | S. cerevisiae | Costanzo et al.3 |
dSLAM | 627 | 4,710 | 15.02 | Genetic | S. cerevisiae | Pan et al.4 |
- Symbols: V, number of vertices (genes/proteins); E, number of edges (interactions);
, average degree. Data sources: (1) BioGRID 2.0.61 [22]; (2) We selectively included “Negative Genetic”, “Synthetic Growth Defect”, “Synthetic Haploinsufficiency”, “Synthetic Lethality” experiments; (3) Supp. Data S4, intermediate cutoff, of Costanzo et al. [23]; (4) Supp. Table S1 of Pan et al. [24].