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Table 1 dPUC increases domain predictions and amino acid coverage

From: Using context to improve protein domain identification

 

E. c.

M. t.

P. f.

P. v.

S. c.

C. e.

D. m.

H. s.

Domains

4.30

6.00

10.30

11.46

6.21

8.07

9.08

7.15

Domains unique families

2.62

2.91

5.73

5.60

3.38

3.66

4.38

3.43

Domains repeated families

26.56

39.61

23.83

37.48

23.79

19.95

18.26

12.34

Amino acids

2.38

4.13

7.25

7.66

3.14

4.74

5.63

3.63

Proteins

0.16

0.08

1.80

1.31

0.38

0.70

0.59

0.56

  1. Percent increases of dPUC predictions relative to the Standard Pfam are given for each organism (E. c., E. coli; M. t., M. tuberculosis; P. f., P. falciparum; P. v., P. vivax; S. c., S. cerevisiae; C. e., C. elegans; D. m., D. melanogaster; H. s., H. sapiens) when considering all domains, first appearance of domains in a protein, subsequent occurrences of domains in a protein, amino acids covered by a domain, and all proteins with domain predictions. (See text.)