From: Robust joint analysis allowing for model uncertainty in two-stage genetic association studies
 | π | γ | ALLEJ | CATAJ | MERTJ | MAX3J |
---|---|---|---|---|---|---|
Recessive Model | 0.5 | 0.0001 | 0.075 | 0.066 | 0.220 | 0.517 |
r = s = 5000 | Â | 0.0002 | 0.083 | 0.073 | 0.242 | 0.546 |
λ1 = 1, λ2 = 1.5 | 0.4 | 0.0001 | 0.053 | 0.047 | 0.154 | 0.365 |
 |  | 0.0002 | 0.062 | 0.055 | 0.180 | 0.408 |
 | 0.3 | 0.0001 | 0.031 | 0.028 | 0.087 | 0.197 |
 |  | 0.0002 | 0.039 | 0.035 | 0.110 | 0.254 |
Additive Model | 0.5 | 0.0001 | 0.835 | 0.846 | 0.782 | 0.799 |
r = s = 2000 | Â | 0.0002 | 0.868 | 0.878 | 0.820 | 0.838 |
λ1 = 1.4, λ2 = 1.8 | 0.4 | 0.0001 | 0.687 | 0.700 | 0.625 | 0.639 |
 |  | 0.0002 | 0.742 | 0.754 | 0.683 | 0.700 |
 | 0.3 | 0.0001 | 0.462 | 0.474 | 0.405 | 0.413 |
 |  | 0.0002 | 0.530 | 0.542 | 0.472 | 0.476 |
Dominant Model | 0.5 | 0.0001 | 0.717 | 0.757 | 0.511 | 0.826 |
r = s = 2000 | Â | 0.0002 | 0.758 | 0.796 | 0.551 | 0.853 |
λ1 = λ2 = 1.5 | 0.4 | 0.0001 | 0.557 | 0.597 | 0.375 | 0.651 |
 |  | 0.0002 | 0.617 | 0.656 | 0.427 | 0.726 |
 | 0.3 | 0.0001 | 0.350 | 0.382 | 0.221 | 0.425 |
 |  | 0.0002 | 0.413 | 0.447 | 0.270 | 0.495 |