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Table 1 Performance of GEM and BLAST

From: Flexible taxonomic assignment of ambiguous sequencing reads

dataset

GEM-mapper

BLAST

 

no hits

1 hit

≥ 2 hits

no hits

1 hit

≥ 2 hits

marine

194,015

4,655

23,621

66,493

8,741

147,057

human

527,727

334,521

91,335

31,881

812,392

109,310

twins V2

990,094

128,649

776

89

1,068,762

50,668

twins V6

523,161

199,782

94,999

36,603

648,975

132,364

chicken

10,442

7,140

4,395

1,548

13,084

7,345

Rat

273,114

27,226

31,509

2

287,971

43,876

  1. Comparison of GEM and BLAST hits for 6 datasets. Two or more hits correspond to ambiguous reads.