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Table 6 Effect of the inclusion of n-ary and/or regenerated complex data on the network degree distributions.

From: iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database

dataset

n

dmax

dmin

alpha

ntail

p_value

power-law

B

6227

1121

104

2.95

150

0.00

no

S

4406

1176

25

2.58

850

0.00

no

N

4164

912

96

3.32

189

0.32

yes

B + S

6281

1301

287

4.39

141

0.22

yes

B + N

6278

1180

273

4.23

183

0.08

no

S + N

4638

1192

137

3.48

159

0.50

yes

B + S + N

6294

1322

202

3.65

440

0.00

no

  1. n: number of proteins in network
  2. dmax: maximum node degree in network
  3. dmin: minimum node degree considered for power-law fitting
  4. alpha: fitted power-law exponent
  5. ntail: number of nodes in tail of distribution considered for power-law fitting
  6. p-value: power-law fitness- > 0.1 guarantees that the data can be fitted to a power-law model, however, better fits may exist for other functions
  7. B: binary data
  8. S: spoke-represented n-ary data
  9. N: n-ary data