From: iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
 |  | iAssembler | CAP3 | MIRA | TGICL | Phrap | Newbler |
---|---|---|---|---|---|---|---|
No. unigenes | 77,572 | 10,5103 | 127,565 | 80,540 | 70,489 | 69,301 | |
Average unigene length (bp) | 231.5 | 214.5 | 209.7 | 221 | 246.5 | 227.4 | |
No. type I errors | identity < 97% | 1 | 569 | 3 | 3,668 | 18,071 | 8,317 |
 | overhang > 30 bp | 1 | 11 | 2 | 1,621 | 5,066 | 11,266 |
No. type II errors | 35 | 12,279 | 14,821 | 4,420 | 4,752 | 1,518 | |
Total assembly errors | 37 | 12,859 | 14,826 | 9,709 | 27,889 | 21,101 | |
Run Time (minute) | 227 | 79 | 57 | 101 | 43 | 7 |