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Table 2 Prediction results of POPISK

From: POPISK: T-cell reactivity prediction using support vector machines and string kernels

PDB ID

Sequence

Source

POPISK Score

Experimental immunogenicity*

1qrn

LLFGYAVYV

Modified Tax protein of HTLV-1

-0.26

-

1qse

LLFGYPRYV

Modified Tax protein of HTLV-1

-0.14

+

1qsf

LLFGYPVAV

Modified Tax protein of HTLV-1

-0.07

-

1ao7

LLFGYPVYV

Tax protein of HTLV-1

-0.04

+

1oga

GILGFVFTL

Matrix protein of influenza

1.10

+

2f53

SLLMWITQC

Cancer/testis antigen 1B

1.11

+

2bnq

SLLMWITQV

Modified Cancer/testis antigen 1B

1.36

+

  1. *+: immunogenic peptide; -: non-immunogenic peptide