Figure 4
From: Correlated mutations via regularized multinomial regression
Contact prediction performance. (A) MADS domain proteins: accuracy (TP/(TP+FP)) and coverage (TP/(TP+FN)) for prediction of residue contacts using RMRCM (black), and CAPS, a method we applied previously to this dataset (red). Note that for CAPS, in three cases no links were predicted at all; these cases are not shown. (B) Response regulator proteins: accuracy vs. rank percentile for predicting contacts for mutual information (red), RMRCM (black) or RMRCM restricted to 60 positions among which maximum MI was found (blue).