From: SIGNATURE: A workbench for gene expression signature analysis
Module | Use Case | Publication |
---|---|---|
ScoreSignatures | To predict activation of pathways in gene expression data. | Â |
CreateSignature | To create a new gene expression signature using a training set. | 1 |
BFRMNormalize | To remove technical variation across one or more gene expression data sets. | 2 |
FindSubtypes | To find subtypes within a gene expression data set. | 3 |
PredictSubtypes | To assign a subtype to gene expression data using a previously developed model. | 3 |
BFRMFactor | To dissect a gene expression data set into modules. | 4 |
BFRMProject | To score the modules in gene expression data using a previously developed model. | 5 |