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Table 1 Statistics for features used in the SVM part of discriminant analysis

From: Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria

 

Known effectors

(n = 40)

Proteome

(n = 4510)

 

Average

Standard deviation

Average

Standard deviation

GC

0.43

± 0.05

0.52

± 0.05

CAI

0.57

± 0.04

0.68

± 0.06

N-terminal instability

13.35

± 6.67

3.97

± 5.52

Molecular Weight

40.79

± 19.49

34.53

± 24.50

Charge

-8.83

± 11.08

-2.62

± 12.66

pI

6.08

± 1.51

7.04

± 1.88

Instability index

42.21

± 8.57

37.77

± 10.83

Aliphatic index

84.94

± 10.53

95.32

± 17.25

GRAVY score

-0.31

± 0.25

-0.06

± 0.44

dN/dS

0.42

± 0.30

0.20

± 0.31

  1. Parameters with statistically significant difference between known effectors and the proteome (Student's t-test, p-value < = 0.05) are shown in bold.
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BMC Bioinformatics

ISSN: 1471-2105

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