Table 4 Complete identification coverage

Xtendem (Data Group1)

Maxquant (Data Group1)

Xtendem (Data Group2)

Maxquant (Data Group2)

Q1 ∪ Q2 ∪ Q3-

Q1 ∩ Q2 ∩ Q3

peptides analyzed

by SCIFA

11862

9582

5682

5463

SCFIA identified completely

11124

8938

5655

5432

SCFIA identification coverage

93.78%

93.28%

99.52%

99.43%