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Table 2 Top hits by PPP in Serratia odorifera 4Rx13 using a query profile for DptD (TIGR03185 family) of the DNA phosphorothioation system, with a modified probability of 0.4.

From: ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process

GI number1

DPT

Genomes2

Total

Genomes3

Score4

Protein Functional Assignment

270263651

66

66

26.26

DptD (DndD) (DNA phosphorothioation)

270263652

59

59

23.48

DptC (DndC) (DNA phosphorothioation)

270263653

32

32

12.73

DptB (DndB) (DNA phosphorothioation)

270263650

19

19

7.56

DptE (DndE) (DNA phosphorothioation)

270263648

16

16

6.37

DptH (DPT-dependent restriction)

270263645

18

20

5.30

DptF (DPT-dependent restriction) (N-terminal)

270263647

15

16

4.97

DptF (DPT-dependent restriction) (C-terminal)

270263646

12

12

4.78

DptG (DPT-dependent restriction)

270263649

7

7

2.79

DGQHR domain protein

  1. 1NCBI GI. 2The number of unique taxa common to the query profile and the target BLAST hit list. 3The total number of unique taxa in encountered where PPP found the optimal depth. 4Score reported by PPP as the negative logarithm of the P-value at the optimal depth, which is lowest that can be obtained from the binomial distribution for any depth.