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Figure 1 | BMC Bioinformatics

Figure 1

From: ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process

Figure 1

Flowchart for profile search using ProPhylo with the Partial Phylogenetic Profile algorithm (PPP). For each step, the relevant software name is indicated. (A) Creation of a profile from various search methods or directly using a set of GenBank GIs. (B) The created profile is a tab delimited text file containing a set of taxonomic IDs from NCBI taxonomic database and 1's and 0's for the presence and absence of the query protein family. (C) The main script ppp.pl searches a given genome using the query profile and generates results as a ranked list of candidate functionally linked proteins.

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BMC Bioinformatics

ISSN: 1471-2105

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