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Table 8 Relative runtime.

From: Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

Level

MacroState

MicroState

OverDangle

NoDangle

5

1.00

0.25

0.15

0.12

4

3.70

0.95

0.59

0.39

3

5.99

1.59

0.96

0.60

2

145.56

14.46

9.39

8.37

1

643.20

117.16

51.76

28.99

  1. The MacroState level 5 value equals 20.76 seconds on an Intel® Xeon® CPU L5420 @ 2.50 GHz.
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BMC Bioinformatics

ISSN: 1471-2105

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