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Table 1 Comparison of predicted ncRNA loci and transcripts to annotation from NCBI and Rfam for S. coelicolor

From: nocoRNAc: Characterization of non-coding RNAs in prokaryotes

annotated ncRNAs

RNAz locus

predicted transcript

nocoRNAc

[correctness %]

predicted transcript

SIPHT

[correctness %]

21 ncRNA genes

21 (100%)

16 (76%)

13 62%)

65 tRNAs

57 (88%)

30 (53%)

1 (2%)

28 cis-regulatory motifs

17 (61%)

1 (94%)

2 (93%)

  1. The first column contains the numbers of annotated elements for 3 types of ncRNAs in S. coelicolor: ncRNA genes (without tRNAs) and tRNAs from NCBI as well as cis-regulatory motifs from Rfam. The second column indicates the number of elements for which RNAz predicted an ncRNA locus (strand-unspecific). Columns 3 and 4 indicate the number of annotated elements predicted to be an ncRNA transcript (strand-specific) by NOCO RNAc and SIPHT, respectively.
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BMC Bioinformatics

ISSN: 1471-2105

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