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Figure 2 | BMC Bioinformatics

Figure 2

From: R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

Figure 2

Complete example using a tiny, contrived RNA. (A) Alignment of fictional RNAs, in Stockholm format [15]. The "#=GC SS_cons" line specifies a stem (shaded blue rectangles) based on matching angle brackets (< and >). The "#=GC R2R_LABEL" line associates the labels [, ], 1, 2 and T with specific columns. The labels are used in R2R markup (e.g., see text "label & use"). (B) Raw output of R2R when run on the input in part A.

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