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Figure 1 | BMC Bioinformatics

Figure 1

From: R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

Figure 1

Example of a consensus diagram for a noncoding RNA. (A) Completed diagram of the consensus for the crcB motif [19] created using R2R and Adobe Illustrator. The consensus diagram shown here is modelled on a previously published figure [19]. The legend inset also applies to other consensus diagrams in this report. A generic legend is available for R2R users (Additional files 3 and 4). (B) Raw output generated by R2R when run on the crcB structure. The pseudoknot is depicted separately, along with the hairpin that is present in 31% of crcB RNAs. (C) R2R commands (Additional file 2) used for the main structure in part B. The symbols j, <, >, 1 and 2 in these commands refer to columns in the alignment (explained in Figure 2). (D) Raw output of R2R "skeleton" drawing of the crcB motif.

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