From: Predicting functionally important SNP classes based on negative selection
rank | class name | p-value | q-value |
---|---|---|---|
1 | nonsynonymous | 5.0 × 10-8 | 1.1 × 10-3 |
2 | constrained elements | 3.6 × 10-5 | 2.3 × 10-3 |
3 | constrained elements minus coding | 1.4 × 10-4 | 3.4 × 10-3 |
4 | coding | 1.2 × 10-3 | 4.5 × 10-3 |
5 | constrained elements minus genes | 3.0 × 10-3 | 5.7 × 10-3 |
6 | constrained elements 1 kb from genes | 3.2 × 10-3 | 6.8 × 10-3 |
7 | H3K79me3 | 8.0 × 10-3 | 7.9 × 10-3 |
8 | constrained elements 100 kb from genes | 1.1 × 10-2 | 9.0 × 10-3 |
9 | miRanda | 3.4 × 10-2 | 1.0 × 10-2 |
10 | H3K36me3 | 4.0 × 10-2 | 1.1 × 10-2 |
11 | PolII | 6.3 × 10-2 | 1.3 × 10-2 |
12 | H3K4me2 | 7.1 × 10-2 | 1.4 × 10-2 |
13 | cisRED | 1.0 × 10-1 | 1.5 × 10-2 |