Table 1 Performance in found interval percentage for the read mappers on simulated D. melanogaster reads.
From: A novel and well-defined benchmarking method for second generation read mapping
|  | Illumina 36 bp | Illumina 50 bp | Illumina 100 bp | 454 Ø 200 bp | 454 Ø400 bp |
|---|---|---|---|---|---|
Bowtie | 78.5 | 72.2 | 55.0 | - | - |
Bowtie* | 78.5 | 72.2 | 59.2 | - | - |
Bwa | 92.7 | 93.5 | 93.8 | - | - |
Shrimp2 | 90.1 | 91.1 | 92.8 | 89.7 | 92.9 |
Soap | 79.6 | 73.1 | 54.7 | - | - |
Soap* | 79.8 | 73.1 | 57.5 | - | - |