From: Pathway-based analysis using reduced gene subsets in genome-wide association studies
Methods | TNFR2 Signaling Pathway (pattern 1) | Fructose and mannose metabolism (pattern 2) | Cytokine-cytokine receptor interaction (pattern 3) |
---|---|---|---|
 | Type I error (95% CI) P-value | Type I error (95% CI) P-value | Type I error (95% CI) P-value |
FPC_AIC | 0.060 (0.039,0.081) 0.302 | 0.058 (0.038,0.078) 0.326 | 0.054 (0.034,0.074) 0.653 |
FPC_BIC | 0.050 (0.031,0.069) NA | 0.048 (0.029,0.067) NA | 0.048 (0.029,0.067) NA |
FPC_FULL | 0.058 (0.038,0.078) 0.492 | 0.054 (0.034,0.074) 0.673 | 0.048 (0.029,0.067) 0.932 |
AML | 0.062 (0.041,0.083) 0.346 | 0.042 (0.024,0.060) 0.653 | 0.034 (0.018,0.050) 0.285 |
MSS | 0.058 (0.038,0.078) 0.523 | 0.050 (0.031,0.069) 0.933 | 0.042 (0.024,0.060) 0.689 |
RTP_5 | 0.058 (0.038,0.078) 0.536 | 0.046 (0.028,0.064) 0.917 | 0.042 (0.024,0.060) 0.673 |
RTP_10 | 0.064 (0.043,0.085) 0.258 | 0.048 (0.029,0.067) 0.922 | 0.044 (0.026,0.062) 0.797 |