Parameters used in T-PIC. | ||
---|---|---|
Parameter | Brief Description | Value used in testing |
L | average fragment length | N/A(varies by experiment) |
 | minimum length of peak (in bp) | 10 |
α | significance p-value | 0.01 |
 | width of interval used to calculate local rate γ(t) | 1,000 |
K | minimum length of interval for discretizing γ | 10,000 (human) |
 |  | 5,000 (D. Melano.) |
D | used in discretizing γ | 5 |
C | using in selecting height h | 7 |
 | number of random trees per region in simulation | 30,000 |