Skip to main content

Table 2 Summary of called peaks.

From: Shape-based peak identification for ChIP-Seq

Summary of called peaks.

Protein

Peak Caller

Mean Length

# of Peaks

% Found by T-PIC

% Found by MACS

% Found by PeakSeq

cad

T-PIC

990.9

8136

100

64.0

91.4

 

MACS

1659.6

4601

95.7

100

99.9

 

PeakSeq

5278.3

11612

38.9

29.1

100

gt

T-PIC

896.1

4502

100

59.3

71.4

 

MACS

1241.4

2929

85.6

100

89.3

 

PeakSeq

16030.8

3497

48.4

38.8

100

hb1

T-PIC

978.5

7523

100

76.7

89.9

 

MACS

1403.4

5640

93.9

100

99.9

 

PeakSeq

876.3

12072

57.8

53.7

100

hb2

T-PIC

930.9

6392

100

75.6

87.4

 

MACS

1321.2

4849

92.4

100

99.9

 

PeakSeq

545

11037

54.5

52.3

100

kr1

T-PIC

883.0

11505

100

68.0

93.9

 

MACS

1624.3

6490

98.3

100

99.9

 

PeakSeq

5189.1

12924

45.9

33.8

100

kr2

T-PIC

884.0

11409

100

67.4

94.2

 

MACS

1588.4

6393

98.3

100

100

 

PeakSeq

5040.9

13540

43.9

31.5

100

FoxA1

T-PIC

510.7

17619

100

64.4

57.4

 

MACS

394.1

13639

83.7

100

69.6

 

PeakSeq

391.6

10320

97.8

91.1

100

STAT1

T-PIC

857.3

84465

100

36.8

62.5

 

MACS

1342.3

29121

96.9

100

97.2

 

PeakSeq

573.8

62124

86.8

51.5

100

  1. A summary of predictions for bicoid (bcd), caudal (cad), giant (gt), hunchback antibody 1 (hb1), hunchback antibody 2 (hb2), knirps (kni), kruppel antibody 1 (kr1), and kruppel antibody 2 (kr2) is given.