Skip to main content

Table 1 Datasets

From: SeqWare Query Engine: storing and searching sequence data in the cloud

Dataset

Technology

SNVs & Indels

SV

Translocations

Reference

European-Venter

Sanger

Y

Y

N

Levy et al. 2007 [3]

European-Watson

454

Y

Y

N

Wheeler et al. 2008 [4]

European- Quake

Helicos

Y

Y

N

Pushkarev et al. 2009 [5]

Asian

Illumina

Y

Y

N

Wang et al. 2008 [6]

Yoruban 18507

Illumina

Y

Y

N

Bentley et al. 2008 [7]

Yoruban 18507

SOLiD

Y

Y

N

McKernan et al. 2009 [8]

Korean

Illumina

Y

Y

N

Ahn et al. 2009 [9]

Korean-AKI

Illumina

Y

Y

N

Kim et al. 2009 [10]

3 human genomes

Complete Genomics

Y

Y

N

Drmanac et al. 2009 [11]

AML T/N

Illumina

Y

Y

N

Ley et al. 2008 [12]

AML genome

Illumina

Y

Y

N

Mardis et al. 2009 [13]

Melanoma

Illumina

Y

Y

N

Pleasance et al. 2010 [15]

Lung cancer

SOLiD

Y

Y

N

Pleasance et al. 2010 [14]

U87MG

SOLiD

Y

Y

Y

Clark et al. 2010 [16]

  1. Fourteen whole genome datasets were loaded into the database, including the U87MG genome, with the March 2006 assembly of the human genome used as reference (NCBI36/hg18). Variant types (SNVs, small/large indels, SVs, etc) loaded and publication references are noted for each respective dataset. This table was adapted from Snyder et al. 2010.