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Table 1 Comparison of different identification methods on the original PPI networks (MYP) and the best extended networks (MYPT2)

From: Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology

 

parameter

MYPT2

MYP

#modules

AVG -log(p-value)

Coverage

#modules

AVG -log(p-value)

Coverage

  

MCL

r = 1.4

271

7.8696

0.95249

327

5.44644

0.95623

MCODE

t = 0.2

95

11.78031

0.26683

60

8.23775

0.10493

NG

s = 4200

279

7.65399

0.79388

292

5.21413

0.81588

HC cc

k = 350

195

7.12497

0.92719

173

4.1128

0.87769

HC nb

k = 350

224

6.65543

0.96706

173

4.0578

0.86120