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Table 3 Computational speed.

From: Improved protein surface comparison and application to low-resolution protein structure data

 

Steps

3DZD

CE

Preprocessing

Surface generation

1.42 (seconds)

-

 

Voxelization

3.70

-

 

Computing descriptor

7.83

-

Pair-wise comparison

 

1.46 x 10-4

2.66

PDB database scan a)

 

9.36

1 day 23 hours 36 minutes

  1. The values are averaged over the 2337 proteins. a) Times for the search against 64098 proteins.