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Table 1 Average number of distinct junctions (AS) per gene for three different tissues in mouse, and average number of distinct junctions per gene in three different tissues that could be identified by tryptic peptides.

From: The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment

Tissue

Ave. unique junctions per gene (All)

Ave. unique junctions identifiable by tryptic peptides per gene (All)

Ave. unique junctions per gene (Mitochondrial)

Ave. unique junctions identifiable by tryptic peptides per gene (Mitochondrial)

Brainstem

4.00

0.27

5.30

0.29 (0.45)

Liver

2.44

0.16

4.91

0.27 (0.42)

Skeletal Muscle

2.42

0.16

4.57

0.24 (0.39)

  1. Column 2 and column 3 were based on all junction reads identified by RNA-Seq for all NCBI Entrez genes. Column 4 and column 5 were based on junction reads by RNA-Seq for 1098 mitochondrial genes. Numbers in brackets were based on tryptic peptides allowing one missed cleavage.