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Table 2 Summary of the percentage of detected CNVs and predicted copy-counts broken down by true copy-counts

From: Detection and reconstruction of tandemly organized de novo copy number variations

Copy-Counts

Detected

Predicted copy-counts

 

C=40

C=30

C=20

C=40

C=30

C=20

2

91.2%

91.0%

90.7%

89.2%

89.7%

89.7%

3

87.9%

87.5%

86.6%

87.9%

88.6%

88.5%

4

86.7%

85.1%

84.7%

72.7%

71.7%

72.2%

  1. CNVs were considered to be detected when the begining and ending reference CNV positions were predicted within 10 base-pairs. In practice, the average deviation from the true positions was about 2 base-pairs. The percentage of predicted-copy counts is reported as the percentage of detected CNVs for which were able to accurately predict the true copy-counts. The average running times for the detection algorithm are 552s, 527s and 497s for coverage of 40, 30 and 20, respectively.