Copy-Counts | Detected | Predicted copy-counts |
---|
 | C=40 | C=30 | C=20 | C=40 | C=30 | C=20 |
2 | 91.2% | 91.0% | 90.7% | 89.2% | 89.7% | 89.7% |
3 | 87.9% | 87.5% | 86.6% | 87.9% | 88.6% | 88.5% |
4 | 86.7% | 85.1% | 84.7% | 72.7% | 71.7% | 72.2% |
- CNVs were considered to be detected when the begining and ending reference CNV positions were predicted within 10 base-pairs. In practice, the average deviation from the true positions was about 2 base-pairs. The percentage of predicted-copy counts is reported as the percentage of detected CNVs for which were able to accurately predict the true copy-counts. The average running times for the detection algorithm are 552s, 527s and 497s for coverage of 40, 30 and 20, respectively.