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Table 4 comparison of 'D-par' and 'H-par' implementations. This table details the run times for D-Par and H-Par implementations using RNA sequences of various lengths and also computes the speed ratio among them.

From: Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspective

Sequence Length

Time (s)

 

D-par

H-par

D:H

21

8.72

1.66

5.253012048

22

11.32

2.13

5.314553991

23

14.88

2.74

5.430656934

25

23.52

4.39

5.357630979

30

71.33

12.89

5.533747091

34

147.32

27.61

5.335747917

38

289.69

54.76

5.29017531

40

399.51

75.20

5.312632979

40

397.71

75.43

5.272570595

41

467.41

87.63

5.333903914

42

541.78

101.65

5.329857354

46

913.41

177.10

5.157594579

47

1055.22

202.42

5.213022429

52

1965.62

377.72

5.203907656

59

4206.06

823.82

5.105557039