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Table 1 Results of multiple alignment algorithms. Comparison of the average alignment length, RMSD and SAS k .

From: Efficient protein alignment algorithm for protein search

 

Dali

CE

SSM

SPSA

NPSA

Average alignment length

130.43

132.82

117.78

119.20

122.65

Average RMSD

2.78

2.83

2.37

2.23

2.30

Average SAS1

2.96

3.08

2.76

2.62

2.48

Average SAS2

3.89

3.60

3.92

3.43

3.25

Average SAS3

6.67

5.69

6.84

5.60

5.19

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BMC Bioinformatics

ISSN: 1471-2105

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