Figure 2
From: Predicting the protein-protein interactions using primary structures with predicted protein surface
Example of the surface predicted by the present method. This example employs the two subunits of RNA ploymerase II (PDB ID: 2HZM), Med18 (chain B) and Med20 (chain A), to show the predicted surface relative to the interface residues. The protein chain in spacefill mode is the target subunit used in surface identification; the protein chain that is displayed in stick mode is treated as the interacting partner of the target subunit. The predicted surface that overlaps the interface residues is shown in yellow, and the non-overlapping region is shown in red. Med18 is the target subunit in (a), and Med20 is the target subunit in (b).