Table 1 Update frequency policy for Sidekick's data sources
From: SIDEKICK: Genomic data driven analysis and decision-making framework
Sidekick Query/Enrichment | Source | Update Policy |
|---|---|---|
Query: disease/term → gene list | NCBI | daily |
| Â | NCIBI Gene2Mesh | monthly |
Query: genes → interacting pair list | NCBI | daily |
| Â | NCIBI MiMI | no stated policy |
Query: genes → orthologous pair list | Ensembl | every 2 months |
Enrich: genes for GO term | NCBI | daily |
| Â | GeneOntology | daily |
Enrich: for disease terms | NCIBI Gene2Mesh | monthly |
Enrich: for gene expression | EBI ArrayExpress/Gene | 8th of each month |
| Â | Express Atlas | Â |
Enrich: for chromosomal proximity | NCBI | daily |