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Figure 1 | BMC Bioinformatics

Figure 1

From: SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels

Figure 1

Workflow stack. SNPexp combines HapMap SNP genotype data with gene expression data from lymphoblastoid cell lines from the same individuals and automatically applies linear regression and the Wald test in PLINK for assessment of transcript level associations. Data is presented in the form of downloadable text files and the (-log10) p-values can be directly visualized in the UCSC Genome Browser.

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