| M1 | M2 | M3 | M4 | M5 |
---|
Genotype values*
| 12 | 00 | 11 | 12 | 22 |
Variables
|
Haplotype pair
|
Homozygous†| 0 | 0 | 1 | 0 | 1 |
Heterozygous§ | 1 | 0 | 0 | 1 | 0 |
Unphased** | 1 | 0 | 0 | 1 | 0 |
Haplotype 1
|
Set‡ | 0 | 0 | 1 | 0 | 1 |
Missing††| 0 | 1 | 0 | 0 | 0 |
Value§§ | 0 | 0 | 0 | 0 | 1 |
Haplotype 2
|
Set | 0 | 0 | 1 | 0 | 1 |
Missing | 0 | 1 | 0 | 0 | 0 |
Value | 0 | 0 | 0 | 0 | 1 |
- *11 indicates a homozygous genotype for the major allele; 12 a heterozygous genotype, and 22 a homozygous genotype for the minor allele; 00 indicates missing genotype.
- †Homozygous 0 indicates the positions that are heterozygous or missing and 1 indicates the homozygous positions.
- §Heterozygous 0 indicates the positions that are homozygous or missing and 1 indicates the heterozygous positions.
- **Unphased 0 indicates the positions that are phased or missing and 1 indicates a heterozygous position without known phase.
- ‡Set 0 indicates the positions that have not been assigned an allele (i.e. unphased or missing) and 1 indicates the allele value and phase is known.
- ††Missing 0 indicates the positions that have an observed allele value and 1 indicates positions that are missing.
- §§Value 0 indicates the positions that have the major allele or unknown and 1 indicates positions that have the minor allele.