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Table 1 Pattern verification: Example cases

From: BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation

No.

Pattern ECs/ec(p)

Target ECs/ec(q)

Case

1.

1.2.3.4

1.2.3.4

TP

2.

1.2.3.4

1.2.3.5

FP

3.

1.2.3.4

1.2.3.-

NA

4.

1.2.3.-

1.2.3.4

TP

5.

1.2.3.-

1.2.3.-

TP

6.

1.2.3.4, 2.6.1.2

1.2.3.4, 2.6.1.-

TP

7.

1.2.3.4, 2.6.1.2

1.2.3.5, 2.6.1.-

FP

8.

1.2.3.4, 2.6.1.2

1.2.3.4, 1.2.3.5, 2.6.1.-

TP

9.

1.-.-.-

1.2.3.4

TP

  1. Table 1 shows nine examples explaining the assignment of the True Positive (TP), False Positive (FP) and Undecided (NA) status to a pattern that is matching an enzyme in the database. A detailed explanation is provided in the main text.
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