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Table 1 EC weight lists assigned to the 16 GO ECs considered in this study

From: IntelliGO: a new vector-based semantic similarity measure including annotation origin

 

Auth

Exp

Comp

Cur

Auto

EC

TAS

NAS

EXP

IDA

IPI

IMP

IGI

IEP

ISS

RCA

ISA

ISO

ISM

IGC

IC

ND

IEA

List1

        

1

        

List2

1

0.5

0.8

0.8

0.8

0.8

0.8

0.8

0.6

0.6

0.6

0.6

0.6

0.6

0.5

0

0.4

List3

1

0.5

0.8

0.8

0.8

0.8

0.8

0.8

0.6

0.6

0.6

0.6

0.6

0.6

0.5

0

0

List4

0

1

  1. Table 1: The various weights assigned to the ECs are listed in the following lines as EC weight lists 1 to 4. TAS: Traceable Author Statement; NAS: Non-traceable Author Statement; EXP: Inferred from Experiment; IDA: Inferred from Direct Assay; IPI: Inferred from Physical Interaction; IMP: Inferred from Mutant Phenotype; IGI: Inferred from Genetic Interaction; IEP: Inferred from Expression Pattern; ISS: Inferred from Sequence Similarity; RCA: Inferred from Reviewed Computational Analysis; ISA: Inferred from Sequence Alignment; ISO: Inferred from Sequence Orthology; ISM: Inferred from Sequence Model; IGC: Inferred from Genomic Context; IC: Inferred from Curator; IEA: Inferred from Electronic Annotation; ND: No biological Data available. The EC categories are indicated in the first line of the table. Auth: Author statement; Exp: Experimental; Comp: Computational Analysis; Cur: Curator statement; Auto: Automatically assigned.