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Table 4 TBC errors for top performing RAAA

From: Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets

  

Crotonases

Mandelate racemases

Vicinal oxygen

chelates

Haloacid

dehalogenases

Nucleotidyl

cyclases

Acyl transferases

GH2

hydrolases

  

RCM

MSA

RCM

MSA

RCM

MSA

RCM

MSA

RCM

MSA

RCM

MSA

RCM

MSA

20 letter

Accuracy

100

100

100

100

91.6

91.3

93.3

99.5

100

100

91.5

97.2

87.9

100

 

Error

0

0

0

0

8.4

8.7

6.7

0.5

0

0

8.5

2.8

12.1

0

Statistics for top performing

RAAA

Accuracy

100

100

100

100

92.2

91.3

96.9

99.5

100

100

97.2

97.2

100

100

 

Error

0

0

0

0

7.8

8.7

3.1

0.5

0

0

2.8

2.8

0

0

Top performing RAAAs

RAAA

GBMR4

ML4

GBMR4

ML4

GBMR4

ML4

EB8

GBMR4

ML4

ML15

ML8

ML4

GBMR4

GBMR4

ML4

ML4

GBMR4

ML4

GBMR4

ML4

GBMR4

  1. TBC accuracy and percentage of TBC error are reported for the 20-letter alphabet and the top performing RAAA. If two RAAAs with the same size have identical TBC accuracies, both RAAAs are reported at the final row in the table. Bold entries correspond to top performers using RCM and MSA for the specified datasets