Skip to main content

Table 2 Conservative and liberal power results for all single locus models.

From: A comparison of internal validation techniques for multifactor dimensionality reduction

    

Conservative Power

Liberal Power

MAF

h 2

OR

Model Name

CV-5

SE

3WS

SE

CV-5

SE

3WS

SE

0.5

0.01

1.5

Dominant

0.52

0.05

0.00

0.00

0.67

0.05

0.59

0.05

0.5

0.01

1.5

Recessive

0.67

0.05

0.00

0.00

0.75

0.04

0.68

0.05

0.5

0.01

1.5

Additive

0.45

0.05

0.00

0.00

0.68

0.05

0.58

0.05

0.5

0.05

2.5

Dominant

0.94

0.02

0.00

0.00

1.00

0.00

1.00

0.00

0.5

0.05

2.5

Recessive

0.93

0.03

0.00

0.00

1.00

0.00

1.00

0.00

0.5

0.05

2.5

Additive

0.91

0.03

0.00

0.00

1.00

0.00

0.93

0.03

0.25

0.01

1.5

Dominant

0.77

0.04

0.01

0.01

0.83

0.04

0.54

0.05

0.25

0.01

1.5

Recessive

0.11

0.03

0.00

0.00

0.24

0.04

0.14

0.03

0.25

0.01

1.5

Additive

0.68

0.05

0.00

0.00

0.80

0.04

0.36

0.05

0.25

0.05

2.5

Dominant

0.88

0.03

0.00

0.00

1.00

0.00

1.00

0.00

0.25

0.05

2.5

Recessive

0.85

0.04

0.00

0.00

0.96

0.02

0.78

0.04

0.25

0.05

2.5

Additive

0.91

0.03

0.00

0.00

1.00

0.00

1.00

0.00

  1. Power results are shown for both the three-way split and 5-fold cross-validation by mode of inheritance, odds ratio (OR), heritability (h2), and minor allele frequency (MAF). Maximum standard errors of all power estimates are also included.