Table 1 SeqTrim accuracy evaluated with artificial sequences
From: SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Vu+I | Vu+I+Vd | |||||
|---|---|---|---|---|---|---|
Expected | Obs (enz) | Obs (-enz) | Expected | Obs (enz) | Obs (-enz) | |
Sequence size | 362 | 412 | ||||
Insert length | 312 | 311.71 | 311.71 | 312 | 310.7 | 311.51 |
Insert-start point | 51 | 51.18 | 51.2 | 51 | 51.2 | 51.2 |
Insert-end point | 362 | 361.9 | 36.91 | 362 | 360.9 | 361.71 |
Rejected | 3 | 0 | 1 | 0 | ||
Mistakenly processed | 9 | 0 | 5 | 0 | ||
Vu+I+pA | Vu+I+pA+Vd | |||||
Expected | Obs (enz) | Obs (-enz) | Expected | Obs (enz) | Obs (-enz) | |
Sequence size | 392 | 442 | ||||
Insert length | 312 | 311.32 | 311.33 | 312 | 310.72 | 311.33 |
Insert-start point | 51 | 51.2 | 51.2 | 51 | 51.2 | 51.2 |
Insert-end point | 362 | 361.52 | 361.53 | 362 | 360.92 | 361.53 |
Rejected | 1 | 0 | 1 | 0 | ||
Mistakenly processed | 3 | 0 | 5 | 0 | ||
Vu+Au+I | Vu+Au+I+Ad+Vd | |||||
Expected | Obs (enz) | Obs (-enz) | Expected | Obs (enz) | Obs (-enz) | |
Sequence size | 375 | 438 | ||||
Insert length | 312 | 311.9 | 311.91 | 312 | 311.9 | 311.91 |
Insert-start point | 64 | 64 | 64 | 64 | 64 | 64 |
Insert-end point | 375 | 374.9 | 374.91 | 375 | 374.9 | 374.91 |
Rejected | 2 | 0 | 0 | 0 | ||
Mistakenly processed | 6 | 0 | 0 | 0 | ||
Vu+Au+I+pA | Vu+Au+I+pA+Ad+Vd | |||||
Expected | Obs (enz) | Obs (-enz) | Expected | Obs (enz) | Obs (-enz) | |
Sequence size | 405 | 468 | ||||
Insert length | 312 | 311.53 | 311.53 | 312 | 311.53 | 311.53 |
Insert-start point | 64 | 64 | 64 | 64 | 64 | 64 |
Insert-end point | 375 | 374.53 | 374.53 | 375 | 374.53 | 374.53 |
Rejected | 0 | 0 | 0 | 0 | ||
Mistakenly processed | 0 | 0 | 0 | 0 | ||