From: A factor model to analyze heterogeneity in gene expression
Factors extracted from the raw AF expression dataset | |||||||
---|---|---|---|---|---|---|---|
 | Individual information | Gene information | |||||
 | hatch | dam | weight | oligo size | chip block | chip row | chip column |
Factor 1 | 8.92E-05 | 0.139 | 0.129 | 2.20E-16 | 2.20E-16 | 0.074 | 0.179 |
Factor 2 | 0.074 | 0.913 | 4.70E-03 | 2.20E-16 | 2.20E-16 | 0.041 | 0.857 |
Factor 3 | 1.90E-02 | 0.848 | 0.489 | 2.55E-14 | 2.20E-16 | 0.716 | 0.376 |
Factor 4 | 6.00E-03 | 0.127 | 0.959 | 1.41E-07 | 2.20E-16 | 0.707 | 0.167 |
Factor 5 | 0.435 | 0.217 | 0.884 | 0.529 | 2.20E-16 | 4.97E-03 | 9.99E-05 |
Factor 6 | 0.946 | 0.412 | 0.615 | 1.79E-07 | 2.20E-16 | 0.876 | 5.11E-07 |
Factors extracted from the AF expression dataset adjusted for the hactch and body weight effects | |||||||
 | Individual information | Gene information | |||||
 | hatch | dam | Weight | oligo size | chip block | chip row | chip column |
Factor 1 | 1.13E-04 | 0.219 | 0.156 | 2.20E-16 | 2.20E-16 | 0.078 | 0.209 |
Factor 2 | 0.052 | 0.841 | 3.40E-03 | 2.20E-16 | 2.20E-16 | 0.036 | 0.814 |
Factor 3 | 0.049 | 0.819 | 0.569 | 2.16E-11 | 2.20E-16 | 0.554 | 0.16 |
Factor 4 | 0.178 | 0.031 | 0.869 | 6.80E-09 | 2.20E-16 | 0.897 | 0.885 |
Factor 5 | 0.949 | 0.727 | 0.647 | 2.79E-12 | 2.20E-16 | 0.291 | 2.36E-10 |