Table 1 Enrichment tests for the list of 287 genes and 688 genes
From: A factor model to analyze heterogeneity in gene expression
LIST OF 287 GENES | |||||
|---|---|---|---|---|---|
GOID | GO Term | Size | Count | Pvalue | HGNC ID |
GO.0006470 | protein amino acid dephosphorylation | 56 | 5 | 0.015 | ACP1, PTPN14, PTPRE, PTP4A3, PTPN6 |
GO.0006725 | cellular aromatic compound metabolic process | 38 | 4 | 0.017 | PPME1, GART, MOCS1, ALDH6A1 |
GO.0007259 | JAK STAT cascade | 9 | 2 | 0.022 | SOCS1, STAMBP |
GO.0043543 | protein amino acid acylation | 9 | 2 | 0.022 | NULL, ZDHHC17 |
GO.0044259 | multicellular macromolecule metabolic process | 10 | 2 | 0.027 | ACE2, SERPINH1 |
GO.0008033 | tRNA processing | 26 | 3 | 0.0296 | TSEN15, FARS2, NSUN2 |
GO.0033002 | muscle cell proliferation | 11 | 2 | 0.032 | NOX1, BMP10 |
GO.0050730 | regulation of peptidyl tyrosine phosphorylation | 12 | 2 | 0.038 | SOCS1, EGFR |
Kegg ID | Kegg pathway | Size | Count | Pvalue | HGNC ID |
map04320 | Dorso ventral axis formation | 9 | 3 | 2.38E-03 | EGFR, SPIRE1, ETS1 |
LIST OF 688 GENES | |||||
GOID | GO Term | Size | Count | Pvalue | HGNC ID |
GO.0006470 | protein amino acid dephosphorylation | 56 | 10 | 1.80E-03 | ACP1, PPM1E, PTPN14, PTPRE, PTP4A3, PPM1G, PTPRU, PPP3CB, PPM1L, PTPRF |
GO.0046483 | heterocycle metabolic process | 33 | 7 | 3.21E-03 | AMBP, GART, P4HA2, HMOX2, AFMID, MTHFS, ALDH6A1 |
GO.0051186 | cofactor metabolic process | 64 | 10 | 4.97E-03 | AMBP, TXNRD3, NOX1, HMOX2, AFMID, GGT7, MTHFS, MOCS1, HMGCS1, ACO2 |
GO.0016202 | regulation of striated muscle development | 15 | 4 | 0.011 | MBNL3, LEF1, NRG1, BMP4 |
GO.0007259 | JAK STAT cascade | 9 | 3 | 0.014 | SOCS1, HCLS1, STAMBP |
GO.0040011 | locomotion | 111 | 13 | 0.017 | PRKG1, EDNRB, ACE2, NOX1, EGFR, NRG1, BMP10, ARAP3, JPH3, VHL, VAX1, DAB1, LAMA2 |
GO.0001932 | regulation of protein amino acid phosphorylation | 26 | 5 | 0.019 | PDGFA, SOCS1, HCLS1, EGFR, BMP4 |
GO.0048585 | negative regulation of response to stimulus | 10 | 3 | 0.020 | AMBP, PPP3CB, FABP7 |
GO.0006534 | cysteine metabolic process | 4 | 2 | 0.021 | CBS, CDO1 |
GO.0002274 | myeloid leukocyte activation | 11 | 3 | 0.026 | IRF4, LCP2, NDRG1 |
GO.0006725 | cellular aromatic compound metabolic process | 38 | 6 | 0.026 | PPME1, GART, AFMID, MTHFS, MOCS1, ALDH6A1 |
GO.0007185 | transmembrane receptor tyrosine phosphatase signaling | 5 | 2 | 0.033 | PTPRE, PTPRF |
GO.0007271 | synaptic transmission cholinergic | 5 | 2 | 0.033 | CHRNA4, LAMA2 |
GO.0000097 | sulfur amino acid biosynthetic process | 5 | 2 | 0.033 | CBS, CDO1 |
GO.0006700 | C21 steroid hormone biosynthetic process | 5 | 2 | 0.033 | STAR, CYP17A1 |
GO.0006787 | porphyrin catabolic process | 5 | 2 | 0.033 | AMBP, HMOX2 |
GO.0001764 | neuron migration | 12 | 3 | 0.033 | PRKG1, VAX1, DAB1 |
GO.0030509 | BMP signaling pathway | 21 | 4 | 0.036 | SOSTDC1, BMP10, MSX2, BMP4 |
GO.0045321 | leukocyte activation | 64 | 8 | 0.040 | SWAP70, CHRNA4, FKBP1B, IRF4, LCP2, PPP3CB, NDRG1, SFRS17A |
GO.0006790 | sulfur metabolic process | 32 | 5 | 0.043 | CBS, CDO1, TXNRD3, GGT7, CHST1 |
GO.0018193 | peptidyl amino acid modification | 43 | 6 | 0.045 | PDGFA, SOCS1, P4HA2, HCLS1, EGFR, MAP2 |
GO.0008211 | glucocorticoid metabolic process | 6 | 2 | 0.048 | STAR, CYP17A1 |
GO.0006769 | nicotinamide metabolic process | 6 | 2 | 0.048 | NOX1, AFMID |
GO.0030111 | regulation of Wnt receptor signaling pathway | 14 | 3 | 0.050 | SENP2, LEF1, SENP2 |
Kegg ID | Kegg pathway | Size | Count | Pvalue | HGNC ID |
map00630 | Glyoxylate and dicarboxylate metabolism | 9 | 4 | 1.87E-03 | GLYCTK, HYI, AFMID, ACO2 |
map00140 | C21 Steroid hormone metabolism | 6 | 3 | 5.11E-03 | DHCR7, HSD11B1, CYP17A1 |
map04320 | Dorso ventral axis formation | 9 | 3 | 0.018 | EGFR, SPIRE1, ETS1 |
map04012f | ErbB signaling pathway | 35 | 6 | 0.026 | PIK3R5, PLCG1, PAK3, EGFR, NRG1, PTK2 |