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Table 1 Marginal likelihood of different models

From: Robust probabilistic superposition and comparison of protein structures

Protein

PDB IDs

Student t

K

Laplace

Gauss

GroEL

1AON-1OEL

-4328.57

-4307.22

-5132.84

-5722.35

DNA Pol

1IH7-1IG9

-5574.80

-5750.12

-6340.01

-8011.05

RAN

1RRP-1BYU

-1124.86

-1176.53

-1795.92

-2286.10

Topo II

1BGW-1BJT

-4496.17

-4553.50

-7210.74

-8042.00

Pneumolysin

2BK2-2BK1

-2692.73

-2465.09

-5195.85

-5491.90

ER

3ERD-3ERT

-538.11

-622.69

-1290.81

-1980.96

RNA Pol

1QLN-1MSW

-5296.61

-5455.79

-8471.69

-10168.07

Adenylate Kinase

1AKE-4AKE

-1499.73

-1502.75

-1685.11

-2000.35

Myosin

1B7T-1DFK

-4819.91

-5046.02

-6380.11

-7701.83

Synthetic data

Student t

-9179.46

-9253.48

-12465.97

-13951.94

Synthetic data

Gauss

-5108.73

-5112.43

-5077.97

-5115.98

  1. Logarithm of the marginal likelihood P(M|D) of the different displacement models obtained for nine structure pairs undergoing domain movements. Highlighted in boldface are the maximum log-marginal likelihood values. The last two rows at the bottom report the log-marginal likelihoods for synthetic data generated according to a Student t and a Gauss distribution.