Table 1 Results for exact and approximate tag sequence matching
From: TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
| Tag sequence | Library | Reads matching with # Mismatches | ||||||
|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 2 | 3 | 4 | 5 | > 5 | ||
| 5'-end | LIB019 |
38,271 (89.37) |
2,253 (5.26) |
564 (1.32) |
185 (0.43) |
50 (0.12) |
64 (0.15) |
1,438 (3.36) |
| LIB020 |
14,491 (84.60) |
1,629 (9.51) |
430 (2.51) |
165 (0.96) |
31 (0.18) |
24 (0.14) |
359 (2.10) | |
| LIB021 |
41,764 (84.74) |
4,748 (9.63) |
1,345 (2.73) |
427 (0.87) |
125 (0.25) |
111 (0.23) |
762 (1.55) | |
| 3'-end | LIB019 |
7,194 (16.80) |
12,156 (28.39) |
2,454 (5.73) |
688 (1.61) |
683 (1.59) |
766 (1.79) |
18,884 (44.10) |
| LIB020 |
2,855 (16.67) |
2,460 (14.36) |
561 (3.28) |
279 (1.63) |
275 (1.61) |
904 (5.28) |
9,795 (57.18) | |
| LIB021 |
7,981 (16.19) |
6,924 (14.05) |
1,800 (3.65) |
942 (1.91) |
908 (1.84) |
2,480 (5.03) |
28,247 (57.32) | |
| Concatenated | LIB019 |
931 (2.17) |
282 (0.66) |
132 (0.31) |
51 (0.12) |
104 (0.24) |
32 (0.07) | - |
| LIB020 |
185 (1.08) |
45 (0.26) |
19 (0.11) |
12 (0.07) |
17 (0.10) |
8 (0.05) | - | |
| LIB021 |
1,302 (2.64) |
464 (0.94) |
215 (0.44) |
120 (0.24) |
135 (0.27) |
30 (0.06) | - | |
