Table 1 Classification of microRNA target site prediction tools
From: TargetSpy: a supervised machine learning approach for microRNA target prediction
Organism | Seed match not required | Seed match required | Seed match required and conservation considered |
|---|---|---|---|
Human | RNA22 [23] TargetSpy no-seed | PITA All 3/15 [9] TargetScanS non-conserved TargetSpy seed | EIMMo [21] MiRBase Targets [24] MiRanda [6] PicTar [22] DIANA-microT [30] TargetScanS [13] PITA TOP [9] MirTarget2 [21] TargetRank [26] TargetSpy cons. seed |
Fly | RNA22 [23] TargetSpy no-seed | PITA All 3/15 [9] TargetSpy seed | EIMMo [21] PicTar [22] MiRBase Targets [24] TargetSpy cons. seed TargetScanS [13] |