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Figure 2 | BMC Bioinformatics

Figure 2

From: GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs

Figure 2

Table and pie graphs summarizing the probe mapping from four widely used human Affymetrix microarray models (U133A, U133 Plus 2.0, Gene 1.0 and Exon 1.0) to different transcribed entities. The figure includes information about the mapping and assignment of probes considering tree types: (i) green, probes mapped to translated genes (mRNAs, i.e. exons encoding for proteins); (ii) blue, probes mapped to ncRNAs (derived from RNAdb and from genes labeled as non-protein-coding in Ensembl); (iii) red, probes not mapped to any known RNA (NA, not assigned).

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BMC Bioinformatics

ISSN: 1471-2105

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