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Table 4 TimeDelay-ARACNE test on the E. coli eight genes network.

From: TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

Genes

SOS True Relations

Correct

Wrong

recA

lexA

-

-

lexA

uvrD, umuDC, recA, uvrA, uvrY, ruvA, polB.

uvrD, umuDC, recA, uvrA, ruvA, polB.

-

uvrY

-

-

lexA

  1. TimeDelay-ARACNE correctly infers the lexA to recA edge but can not infer recA to lexA edge due a limitation of the algorithm. TimeDelay-ARACNE also infers lexA to uvrY edge but the direction is wrong.