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Table 2 TimeDelay-ARACNE, TSNI, Banjo and ARACNE performance against synthetic data changing network data points.

From: TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

  

TimeDelay-ARACNE

TSNI

Banjo

ARACNE

Genes

Time Points

PPV

Recall

F -score

PPV

Recall

F -score

PPV

Recall

F -score

PPV

Recall

F -score

genes 10

points 10

0.24

0.22

0.22

0.29

0.14

0.19

<0.1

<0.1

<0.1

0.27

0.14

0.17

genes 10

points 20

0.31

0.34

0.32

0.22

0.10

0.14

0.20

<0.1

0.13

0.25

0.09

0.13

genes 10

points 30

0.31

0.42

0.34

0.39

0.11

0.17

0.17

0.10

0.12

0.63

0.14

0.22

genes 10

points 40

0.41

0.55

0.45

0.39

<0.1

0.15

0.22

0.16

0.18

0.79

0.14

0.23

genes 10

points 50

0.33

0.60

0.41

0.43

0.11

0.18

0.19

0.13

0.15

0.78

0.12

0.21

  1. TimeDelay-ARACNE performance results show a partially direct correlation with time points.