TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

Table 1 TimeDelay-ARACNE, TSNI, Banjo and ARACNE performance against synthetic data changing network gene numbers.

		TimeDelay-ARACNE			TSNI			Banjo			ARACNE
Genes	Time Points	PPV	Recall	F -score	PPV	Recall	F -score	PPV	Recall	F -score	PPV	Recall	F -score
genes 10	points 50	0.33	0.60	0.41	0.43	0.11	0.18	<0.19	0.13	0.15	0.78	0.12	0.21
genes 20	points 50	0.46	0.35	0.39	0.52	<0.1	0.11	<0.1	0.13	0.11	0.55	0.06	0.10
genes 30	points 50	0.47	0.23	0.29	0.35	<0.1	<0.1	<0.1	<0.1	<0.1	0.68	0.04	0.08

TimeDelay-ARACNE performance results seem to be correlated with network gene numbers.